6.4 Color OpenGL

The color of visualized atoms can be changed selecting the items in View -> Color menu (click here for more information). The preselected coloring methods are:

Color by atom
Color by atom
(white = hydrogen, green = carbon, red = oxygen, blu = nitrogen, yellow = sulfur, cyan = fluorine, magenta = chlorine or unknown atom, orange = bromine, violet = iodine).
  
Color by residue
Color by residue
  
Color by chain
Color by chain
  
Color by segment
A different color is selected for each segment (e.g. protein, water, ligand) in the molecule or assembly.
Color by segment
  
Color by molecule
Color by molecule
  
Color by charge
The color ramp indicates the more negative (blue) and the more positive (red).
Color by charge
  

 

Using the View -> Color -> Selection menu item, it's possible to choice the color of the visible atoms from the color table, as shown below:

Color table