10.8 Included scripts | ![]() |
10.8.1 Introduction
The VEGA package includes some scripts placed in the Scripts directory with the following sub-directory structure:
Scripts | |
Batch processing | |
Common | |
Databases | |
Examples | |
Internet | |
Protein tools | |
Utilities |
10.8.2 Batch processing
This directory includes batch processing scripts:
Automatic quenching.r | Automatic quenching for dynamics trajectory files |
Format conversion.r | File format conversion |
Mopac.r | Multiple Mopac runs |
10.8.3 Common
This directory contains the initialization scripts to include in the REBOL scripts:
fmod.r | Fmod commands |
formats.r | File format keywords and other definitions |
utils.r | Functions for path manipulation |
vega.r | VEGA interface (don't change it without any reason) |
vegadef.r | Default settings used by vega.r |
10.8.5 Database
This directory includes the scripts for the database manipulation.
expander.r | Database eXpander. It's a REBOL/view script able to extract the molecules contained in a database into a directory specifying the file format, the compression and the save attributes (connectivity and constraints). |
10.8.4 Examples
This directory includes the example scripts:
demo.bat | Demo script |
demo.r | The same of the above, but written in REBOL |
info.r | Show some infos in the VEGA console |
mp3player.r | Minimalist mp3 player (fmod demo) |
requesters.r | Simple demo of the VEGA built-in requesters |
10.8.5 Internet
This directory includes Internet-related scripts:
websrv.r | Mini Web server for on-line manual |
10.8.6 Protein tools
This directory includes the visualization scripts:
Color by aminoacid properties.r | Show the molecule by the aminoacid properties |
Color aminoacid.r | Show the molecule by the selected aminoacids |
Fasta to text.r | Convert a Fasta into a text file. That's is useful to load it into Excel. |
10.8.8 Utilities
This directory includes the generic scripts. Some of these require REBOL/View.
Calculator.r | Simple calculator |
Clock.r | Digital clock |
Image viewer.r | Image viewer |