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VEGA Manual

1. Introduction

2. Running VEGA OpenGL

3. Mouse, keyboard and joystick

4. The main menu

5. Editing
   5.1 Atoms
   5.2 Atom properties
   5.3 Atom constraints
   5.4 Centroids
   5.5 Bonds
   5.6 Torsions
   5.7 Add fragments
   5.8 Add hydrogens
   5.9 Add a solvent cluster
   5.10 Add ions
   5.11 Remove dialogs
   5.12 Build a solvent cluster
   5.13 Merge with another file
   5.14 The clipboard

6. Display
   6.1 Atom selection
   6.2 Display modes
   6.3 View settings
   6.4 Color
   6.5 Molecule information

7. Calculations
   7.1 Charges & Pot.
   7.2 Mopac
   7.3 Surface
   7.5 Trajectory analysis
   7.6 Selection Tool
   7.7 BioDock
   7.8 Interactions

8. Databases:
   8.1 Open/create
   8.2 Database explorer

9. Integrated Tools:
   9.1 GraphEd
   9.2 MiniEd
   9.3 Task Manager
   9.4 SendVegaCmd
   9.5 WinDD

10. Plugin system
   10.1 Introduction
   10.2 Dhrystone plugin
   10.3 Escher NG plugin
   10.4 Predator plugin
   10.5 ClustalX plugin
   10.6 PowerNet plugin
   10.7 REBOL
   10.8 Scripts
   10.9 Plugin SDK

11. Extended commands
   11.1 Introduction
   11.2 Standard commands
   11.3 Accessing to databases
   11.4 OpenGL commands
   11.5 Dialogs & GUI
   11.6 Fmod 

12. Compatibility list